United StatesServices Tax filingsForm 990 preparation

Tax filings

Form 990 preparation for US businesses

The nonprofit’s public return — functional expense allocation done right, because the 990 is read by donors, not just the IRS.

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What is form 990 preparation?

The nonprofit’s public return — functional expense allocation done right, because the 990 is read by donors, not just the IRS.

Form 990 is the annual information return every federally tax-exempt organization files with the IRS, and it is one of the few US tax documents that is a public record by design. Once filed, it lands on the IRS's own exempt-organization database and gets re-published by sites like Candid and Charity Navigator, where a donor, a grant committee, or a journalist can pull it up and read exactly what the organization raised, what it spent, and what it paid its officers. A 990 that is technically compliant but sloppy in presentation — expenses lumped together, program descriptions thin, compensation figures that don't tie to the rest of the return — reads as a red flag to exactly the audience it's written for, even when nothing on it is wrong.

Which variant applies is decided by size, not by choice. An organization with gross receipts normally at or under $50,000 files Form 990-N, an eight-question electronic notice with no financial detail. An organization under $200,000 in gross receipts and under $500,000 in total assets files Form 990-EZ, a shorter form with summarized financials. Everyone else files the full Form 990, with its twelve parts and a stack of schedules — Schedule A to establish public charity status, Schedule B to list contributors, Schedule O for the narrative explanations the form's checkboxes can't hold, and others depending on the organization's activities. Crossing a threshold mid-year doesn't grandfather a smaller form; the return due that year is whichever variant the organization's actual numbers require.

Who does what

Prepared with partner CPA firms who review, sign and file.

Who does what

Your CapEasy teamForm 990 preparation, the reconciliations and reporting behind it, and the questions list that keeps it honest.
Your CPA or enrolled agentEverything that carries a licence in United States — rendered exactly as written: issue compilation, review or audit reports — those are restricted to licensed cpa firms.
YouOne conversation with one named person, and the decisions that are genuinely yours.

Form 990 preparation in United States

The form you file is set by gross receipts and total assets, not by preference

990-N applies when gross receipts are normally $50,000 or less — it's an eight-question electronic notice with no financial statements attached. 990-EZ applies when gross receipts are under $200,000 and total assets are under $500,000. Every organization above those thresholds files the full Form 990. We work out which variant a given year's numbers require and prepare that version; an organization that grew past 990-N or 990-EZ range mid-year files the bigger form for that year, not the one it used previously.

The functional expense statement is where a compliant 990 can still mislead a reader

Part IX of the full Form 990 requires every expense to be split across program services, management and general, and fundraising. Shared costs — a role that spans program delivery and fundraising, a facility used for both mission work and administration — need a documented allocation basis, not an eyeballed split. We build that allocation from the organization's own time and space records and keep the basis on file, because a rating agency or a grant reviewer reading the functional expense statement is judging the organization's efficiency off exactly that split.

The 990 is public — Schedule B contributor names have a specific disclosure carve-out

Unlike most US tax returns, a filed Form 990 (and 990-EZ) is published, both by the IRS and by third-party nonprofit databases. Schedule B, which lists contributors above a reporting threshold, is filed with the IRS but is not required to be made public by most organizations (the donor-name and address portion is generally withheld from the public copy for organizations other than private foundations and section 527 groups). We prepare the return with that distinction built in, so the version that goes public doesn't carry contributor detail it isn't required to disclose.

Three consecutive missed years triggers automatic revocation — with no appeal on the missed-year facts

An organization that fails to file a required 990-series return for three consecutive years loses its tax-exempt status automatically, by law, on the filing due date of the third year — there is no separate IRS notice-and-cure step before it happens. We flag any client heading into a second consecutive missed year as urgent, because the fix at that point (streamlined or full reinstatement) is a materially bigger job than filing on time would have been.

What your CPA or enrolled agent receives from us

  • A determination of which form applies for the fiscal year — 990-N, 990-EZ, or full 990 — based on the organization's actual gross receipts and total assets, not the prior year's form.
  • A complete draft of the applicable form, populated from the organization's financial statements and board/governance records.
  • The Part IX functional expense statement (full 990) with program services, management and general, and fundraising columns allocated on a documented basis, plus the allocation workpaper behind it.
  • Schedule A (public charity status) drafted and checked against the organization's actual public-support test position.
  • Schedule B (contributor schedule) prepared per the applicable reporting threshold, with the public-disclosure carve-out correctly applied to what gets published.
  • Schedule O narrative responses drafted for every checkbox item the form requires an explanation for.

Questions worth asking before you start

Who actually does the work — a person or an AI tool?

A named person on our team owns your file and reviews everything that leaves it. Software does a real share of the grinding underneath it — coding, matching, flagging the obvious gaps — but nothing regulated happens without a person’s judgement, and nothing here is signed or filed by an algorithm.

Who can legally file this?

Prepared with partner CPA firms who review, sign and file.

Which software do you work in?

Whatever you already run. Most commonly QuickBooks, Xero, NetSuite, Sage, Zoho Books and a handful of others — we work inside your system rather than moving you onto one of our own.

How does this actually start?

A short, free read-only look at what you already have, and a written note on what we found. A scoping call decides the size of the engagement — nothing here commits you to anything.

What does it cost?

There is no published price for form 990 preparation — it depends on volume, how many entities are involved, and how far behind the books are. We quote after the read-only review, which is free.

How does this fit with the rest of tax filings?

Form 990 preparation sits inside tax filings, alongside Form 1040 preparation, Schedule C & self-employment taxes, Form 1065 & K-1 preparation. Most clients end up buying the category as a whole rather than one leaf at a time, but starting narrow is fine.

Which Form 990 variant does our organization actually need to file?

It depends on gross receipts and total assets for that specific fiscal year: 990-N if gross receipts are normally $50,000 or under, 990-EZ if gross receipts are under $200,000 and total assets are under $500,000, and the full Form 990 above those thresholds. We check the current year's actual numbers before assuming last year's form still applies.

Who actually signs and files our 990 — CapEasy or someone else?

CapEasy prepares the complete draft: the form, the functional expense allocation, and all required schedules. A partner CPA firm reviews that draft, signs as the paid preparer, and files it with the IRS. Preparation and filing are two different steps, and the licensed step is theirs.

What is the functional expense statement and why does it matter more than other parts of the form?

It's Part IX of the full Form 990 — every expense split into program services, management and general, and fundraising. It's the number donors, grant committees, and rating sites look at first, because it's the closest proxy the form offers for how much of a gift reaches the mission. A weak allocation there can make an efficient organization look inefficient, or vice versa.

Is our Form 990 really public? Who can see it?

Yes. Once filed, a 990 or 990-EZ is published on the IRS's own exempt-organization search tool and re-published by third-party databases like Candid and Charity Navigator. It's one of the few US tax filings designed to be read by the public, not just the tax authority.

Do donor names show up on the public version of our 990?

Generally no. Schedule B lists contributors above a reporting threshold and is filed with the IRS, but most organizations aren't required to make the contributor-name and address portion public. We apply that carve-out when preparing the public-facing copy.

What happens if we miss a filing deadline?

A single late filing carries penalties and should be caught and extended (via Form 8868, a six-month extension) before it happens. The harder line is three consecutive missed years: that triggers automatic revocation of tax-exempt status by law, with no separate warning notice. We treat a second consecutive missed year as an urgent flag, not a routine one.

How is shared overhead — like a program director who also fundraises — allocated across program, management, and fundraising?

On a documented basis tied to actual time or activity, not a guess. We build the allocation from the organization's own time or space records and keep that workpaper on file, so it can be explained if a grant reviewer or the partner CPA firm asks how the split was arrived at.

Does CapEasy calculate whether we still qualify as a public charity, or is that on us?

We draft Schedule A, which documents public charity status against the applicable support test, using the organization's own revenue records. The partner CPA firm reviews that draft as part of reviewing the whole return before it's signed and filed.

What do you need from us to prepare the 990?

Financial statements for the fiscal year, board and governance records (officer list, meeting minutes if changes occurred), payroll records for anyone reported as an officer or key employee, and records supporting any shared-cost allocation between program, management, and fundraising activity.

Can you fix a 990 that's already been filed with errors, or help us catch up after missed years?

We can prepare a corrected return for the partner CPA firm to review and file, and we can prepare the filings needed to work toward reinstatement if exemption has lapsed. The specific reinstatement path and any related representation before the IRS is directed by the partner CPA firm.

Does the functional expense allocation change if our fiscal year is not the calendar year?

No — the allocation method is the same regardless of fiscal year. What changes is the filing deadline, which is always the 15th day of the 5th month after your organization's fiscal year end, not a fixed calendar date.

Your CapEasy experts

Connect with us

Talk to the people who handle this work every day — no call centre, no hand-offs.

Ayush Joshi

Ayush Joshi

Co-Founder

Ex-OYO and Tenaciousfly. 7+ years in business development, strategic acquisitions, financing and debt syndication.

Aditya Jain

Aditya Jain

Co-Founder

Ex-Bank of America. 4+ years in investment banking, EU & Indian compliances, ESG compliances, and project management.

Manav Raval

Virtual CFO & Tax Specialist

Section 80-IAC, tax planning and startup compliance. Previously at Toyota Motor Corporation and Jaguar Land Rover.

Ayush Faldu

Virtual CFO & Tax Specialist

Financial strategy, budgeting and cash flow — a CFO’s judgement, monthly.

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