AustraliaServices Payroll operationsPayroll processing

Payroll operations

Payroll processing for Australian businesses

Pay runs prepared, checked and ready on the same cadence every period.

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What is payroll processing?

Pay runs prepared, checked and ready on the same cadence every period.

Payroll processing in Australia is the same recurring run discipline as anywhere else — approved hours, salaries and leave turned into a pay event on a fixed cycle, every time, without a missed pay day — but it sits inside a different reporting frame. Most Australian small businesses run weekly, fortnightly or monthly, a choice driven by the award or enterprise agreement covering their staff and by cash flow, not preference, and once it's set it drives the cutoff, the approval window and the STP reporting date. Our job is that run. Your pay cycle, your Xero Payroll, MYOB or QuickBooks AU account, and any ATO lodgment stay with you and your registered agent — we take your inputs by the cutoff, prepare the pay event inside the software you already use, route it for your approval, and hand off a clean, correct run each cycle.

Single Touch Payroll (STP Phase 2) changes what processing a run means here compared with a jurisdiction that reports quarterly: every pay event — gross pay, PAYG withholding, superannuation liability — has to be reportable to the ATO on or before pay day, not batched up for later. We prepare each run so the STP-ready data is correct the moment it's finalised: income types, allowances and leave categories coded the way STP Phase 2 expects, so the STP lodgment your registered BAS or tax agent submits reflects a run that was right the first time rather than one chasing a correction event.

Why it matters

Without a systemWith CapEasy
People paid late or incorrectlyPay runs on schedule, every cycle
Payroll journals that never tie to the bankPayroll ledger that reconciles
Year-end reconciliation done from scratchYour filer gets clean numbers, on time

What we need from you

People

  • Employee master data
  • Employment contracts
  • Salary structure
  • Benefits and deductions
  • Start and leave dates

Each cycle

  • Attendance and overtime
  • Leave records
  • Bonus and commission
  • Reimbursements

System

  • Payroll software access
  • Prior payroll reports
  • Registration references held by your filer

How it runs, step by step

  1. Setup
    • Employee onboarding in the payroll system
    • Salary structure configuration
    • Benefits and deductions setup
  2. Each pay run
    • Gross-to-net calculation in the system
    • Overtime and bonus adjustments
    • Deductions processing
  3. Booking & reconciliation
    • Payroll journal entries
    • Payroll ledger reconciliation
    • Liability reconciliation

Who does what

Your CapEasy teamPayroll processing, the reconciliations and reporting behind it, and the questions list that keeps it honest.
Your registered BAS or tax agentEverything that carries a licence in Australia — rendered exactly as written: work out what goes on your bas, or advise you on it — under tasa 2009 that requires registration we do not hold.
YouOne conversation with one named person, and the decisions that are genuinely yours.

Payroll processing in Australia

Who is authorised to lodge the STP report we help prepare

TASA 2009 s.90-10 draws the line: ascertaining or advising on a BAS-provision liability — and STP reporting of PAYG withholding and superannuation liability counts as one — is a BAS service only a registered BAS or tax agent may provide. We prepare the pay event inside Xero Payroll, MYOB or QuickBooks AU so the STP data is accurate; your registered agent reviews and lodges it with the ATO under their own registration. If you don't know who holds that registration for your STP lodgments, that's the first thing to confirm before an off-cycle run touches a pay event.

Superannuation guarantee: rate, timing and the Super Guarantee Charge

The super guarantee rate is 12% of ordinary time earnings (from 1 July 2025), paid quarterly with a 28-day-after-quarter-end due date — miss it, and the shortfall becomes a Super Guarantee Charge with interest and an admin fee, calculated differently to a normal contribution and non-deductible. We calculate SG per run against OTE and reconcile the quarterly total early enough for your registered agent to act before the due date; whether a particular allowance or bonus counts toward OTE is a determination we flag for them.

Overtime, penalty rates and Modern Award classification

Most Australian employees are covered by a Modern Award or enterprise agreement that sets overtime, penalty rates and casual loading by classification level — there's no single national overtime threshold the way the FLSA sets one. We flag hours or a pay rate that look inconsistent with what's on file before a run goes out; deciding which award applies, or what classification level an employee sits at, is your call or your HR adviser's or registered agent's.

Final pay and redundancy under the National Employment Standards

The Fair Work Act's National Employment Standards set out notice periods, redundancy pay scales by years of service, and unused annual leave payout on termination — there's no single statutory same-day rule like some US states use, but the Fair Work Ombudsman expects final pay within a reasonable time, commonly the next regular pay cycle or sooner where the award requires it. We track what triggers an off-cycle run and prepare it fast once notified; the entitlement calculation itself — redundancy tier, notice-in-lieu — is confirmed with your registered agent or HR adviser before the run is submitted.

What your registered BAS or tax agent receives from us

  • Each STP-ready pay event pre-checked against the prior cycle for hours, rate and headcount anomalies before it reaches your approval screen
  • A cutoff calendar mapped to your pay cycle (weekly, fortnightly or monthly) with the exact day/time inputs are due
  • Timesheet, leave and salary-change inputs entered or synced into Xero Payroll, MYOB or QuickBooks AU ahead of each cutoff
  • A written approval step before every run — scheduled or off-cycle — is finalised for STP
  • Off-cycle runs prepared same-cycle for terminations, redundancies or rate corrections, logged the same way as the regular run
  • Superannuation guarantee calculated against ordinary time earnings on every run, with the quarterly total reconciled ahead of the 28-day due date

Questions worth asking before you start

Who actually does the work — a person or an AI tool?

A named person on our team owns your file and reviews everything that leaves it. Software does a real share of the grinding underneath it — coding, matching, flagging the obvious gaps — but nothing regulated happens without a person’s judgement, and nothing here is signed or filed by an algorithm.

Is there a filing or lodging step here?

No — payroll processing is operational work inside your books, not something submitted to ATO. Where a filing does sit downstream of it, inside payroll operations more broadly, that stays with your registered BAS or tax agent, never with us.

Which software do you work in?

Whatever you already run. Most commonly QuickBooks, Xero, NetSuite, Sage, Zoho Books and a handful of others — we work inside your system rather than moving you onto one of our own.

How does this actually start?

A short, free read-only look at what you already have, and a written note on what we found. A scoping call decides the size of the engagement — nothing here commits you to anything.

What does it cost?

There is no published price for payroll processing — it depends on volume, how many entities are involved, and how far behind the books are. We quote after the read-only review, which is free.

How does this fit with the rest of payroll operations?

Payroll processing sits inside payroll operations, alongside Contractor payments, Single Touch Payroll support, Super guarantee processing. Most clients end up buying the category as a whole rather than one leaf at a time, but starting narrow is fine.

What happens if a manager submits timesheets after the cutoff?

We hold the cutoff and chase the input actively — a direct follow-up, not a queued email — in the window before the run is due. If it still can't be resolved before the pay event is finalised, the fix goes out as a same-cycle off-cycle correction rather than letting an incomplete STP event go through.

Can you run payroll on different cadences for different employee groups — say, weekly for casuals and monthly for salaried staff?

Yes, split cadences are common and we run each group on its own cutoff and approval schedule inside the same payroll system, as long as the provider (Xero Payroll, MYOB, QuickBooks AU) supports multiple pay schedules on your plan.

Who approves a pay run before the STP event is lodged?

You do. Every scheduled or off-cycle run is routed to you for a final look and sign-off before it is finalised — we prepare it, you approve it, your registered BAS or tax agent lodges the STP report under their own registration.

How fast can an off-cycle run go out for a termination or redundancy payment?

It depends on the entitlement calculation and how quickly we're told about the termination — there's no single national same-day rule, but the Fair Work Ombudsman expects final pay within a reasonable time. We prepare the check as soon as we have the details and route it for your approval immediately rather than waiting for the next regular cycle.

Do you decide an employee's award classification or overtime entitlement?

That determination sits with your HR adviser, bookkeeper or registered agent, based on the applicable Modern Award or enterprise agreement. We keep the classification and pay-rate fields accurate in the system and flag anything that looks inconsistent with what's on file, so the right person can make the call with current data.

What do you do when an employee's hours look wrong compared to a prior cycle?

We flag it before the run reaches your approval screen — a spike or drop against the prior cycle, a rate that doesn't match what's on file, hours that don't line up with the roster. You get the anomaly and the context, not a silent pass-through.

Do you set up our payroll provider account or choose our pay cycle for us?

Account setup, provider selection, and cadence (weekly vs. fortnightly vs. monthly) are decisions you make, usually with input from your registered agent on cash flow and award coverage. We work inside whatever cycle and provider you've already chosen.

How do corrections to a prior STP-reported run get handled?

As a tracked off-cycle event, not a silent re-entry. We log what the correction fixes, which prior run it relates to, and route it for approval the same as any other run — so there's a clean trail for your registered agent at the next STP lodgment.

Who lodges the STP report and reconciles superannuation guarantee from the runs you process?

Your registered BAS or tax agent, under their own registration. We prepare accurate, STP-ready run data and flag the SG figure each cycle; BAS agent registration, the STP lodgment, and the SG determination stay with them.

What happens if a new employee starts before their TFN declaration or Super Choice form is complete?

We check the TFN declaration, Super Choice form and work classification against a short list before including anyone in their first run, so a gap gets caught before cutoff. If something is still missing, we flag it rather than push a run through with incomplete onboarding data.

Your CapEasy experts

Connect with us

Talk to the people who handle this work every day — no call centre, no hand-offs.

Ayush Joshi

Ayush Joshi

Co-Founder

Ex-OYO and Tenaciousfly. 7+ years in business development, strategic acquisitions, financing and debt syndication.

Aditya Jain

Aditya Jain

Co-Founder

Ex-Bank of America. 4+ years in investment banking, EU & Indian compliances, ESG compliances, and project management.

Manav Raval

Virtual CFO & Tax Specialist

Section 80-IAC, tax planning and startup compliance. Previously at Toyota Motor Corporation and Jaguar Land Rover.

Ayush Faldu

Virtual CFO & Tax Specialist

Financial strategy, budgeting and cash flow — a CFO’s judgement, monthly.

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