AustraliaServices Payroll operationsSuper guarantee processing

Payroll operations

Super guarantee processing for Australian businesses

Superannuation calculated in the payroll system and reconciled each quarter.

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What is super guarantee processing?

Superannuation calculated in the payroll system and reconciled each quarter.

Superannuation guarantee isn't a separate task bolted onto payroll — it's a number the payroll system calculates on every single run, off ordinary time earnings, the moment hours and salary are entered. The obligation itself is quarterly (contributions due 28 days after each quarter ends), but the data that number is built from is generated pay cycle by pay cycle, so a mistake made in week one of a quarter compounds silently across twelve or more runs before anyone reconciles it. Our job is that data hygiene: keeping the SG rate current in Xero Payroll, MYOB or QuickBooks AU, keeping ordinary time earnings coded correctly so the software calculates against the right base, and reconciling the running total against the quarterly obligation before the 28-day due date arrives. The legal determination of what your business owes, and whether a specific payment counts as OTE, is made by your registered BAS agent or accountant, working from the reconciled data we keep clean.

The rate itself moves on a legislated schedule — 12% of OTE from 1 July 2025, up from 11.5% the year before, on its way toward the 12% ceiling under the Superannuation Guarantee (Administration) Act's phased increases. A payroll system that hasn't had its SG rate setting updated on 1 July keeps calculating at last year's percentage on every run until someone notices, and because SG is a pay-run field rather than a once-a-year form, that drift shows up in every payslip for months, not once at lodgment. We check the configured rate against the current legislated percentage at each financial year start and flag it the moment a run looks like it's calculating against the wrong base — separate from, and in addition to, catching per-employee coding errors.

Who files this

Your registered BAS or tax agent files or lodges this. We prepare, reconcile and support the numbers behind it; the submission itself is theirs, every time.

Why it matters

Without a systemWith CapEasy
People paid late or incorrectlyPay runs on schedule, every cycle
Payroll journals that never tie to the bankPayroll ledger that reconciles
Year-end reconciliation done from scratchYour filer gets clean numbers, on time

What we need from you

People

  • Employee master data
  • Employment contracts
  • Salary structure
  • Benefits and deductions
  • Start and leave dates

Each cycle

  • Attendance and overtime
  • Leave records
  • Bonus and commission
  • Reimbursements

System

  • Payroll software access
  • Prior payroll reports
  • Registration references held by your filer

How it runs, step by step

  1. Setup
    • Employee onboarding in the payroll system
    • Salary structure configuration
    • Benefits and deductions setup
  2. Each pay run
    • Gross-to-net calculation in the system
    • Overtime and bonus adjustments
    • Deductions processing
  3. Booking & reconciliation
    • Payroll journal entries
    • Payroll ledger reconciliation
    • Liability reconciliation

Who does what

Your CapEasy teamSuper guarantee processing, the reconciliations and reporting behind it, and the questions list that keeps it honest.
Your registered BAS or tax agentEverything that carries a licence in Australia — rendered exactly as written: work out what goes on your bas, or advise you on it — under tasa 2009 that requires registration we do not hold.
YouOne conversation with one named person, and the decisions that are genuinely yours.

Super guarantee processing in Australia

Who may calculate or advise on the SG liability itself

TASA 2009 s.90-10 defines a BAS service to include ascertaining or advising on a superannuation guarantee liability — that makes the SG calculation itself, as a legal determination of what's owed, a service only a registered BAS or tax agent may provide. We keep the payroll system's OTE coding and rate settings accurate so the software's own calculation is built on clean data; signing off on the figure as the liability, and advising on whether a specific payment or run's total is correct as a compliance matter, is your registered agent's call. If you need someone to state the SG liability with authority, that's your registered agent, working from the reconciled data we hand them.

The SG rate schedule and where it currently sits

The Superannuation Guarantee (Administration) Act 1992 set out a legislated phase-in: the rate reached 11% on 1 July 2023, 11.5% on 1 July 2024, and 12% on 1 July 2025, where it is scheduled to remain. A payroll system's SG rate field doesn't update itself on 1 July — someone has to check it, and if nobody does, every run for the rest of the year calculates against the prior year's percentage. We verify the configured rate at each financial-year rollover as a standing check, not a one-off.

Ordinary time earnings and what SGR 2009/2 actually resolves

The ATO's ruling SGR 2009/2 sets out that OTE generally includes salary, ordinary hours, most allowances, and commissions, but generally excludes overtime — with genuine grey areas around bonuses tied to performance, some leave loading, and allowances that blur into reimbursements. That grey area is a determination, and determinations sit with your registered BAS agent or accountant. Our part is narrower and mechanical: every pay component gets a consistent OTE flag in the payroll system, and any new component type is surfaced before it runs unclassified, so the person making the OTE call is working from data that was tagged deliberately rather than defaulted by accident.

The 28-day due date and the Super Guarantee Charge

Contributions must reach each employee's nominated fund by the 28th day after the quarter ends (28 October, 28 January, 28 April, 28 July) — arrival in the fund, not the date the payment was sent, is what counts, which matters because clearing-house processing can take several business days. Miss it, and the shortfall converts to a Super Guarantee Charge: calculated on total salary and wages rather than OTE (a broader, more expensive base), plus a flat 10% per annum nominal interest component and a $20-per-employee-per-quarter administration fee, and the SGC itself is not tax-deductible the way a normal contribution is. We reconcile against the running total through the quarter specifically so a shortfall is caught with time to fix it before the 28-day mark, not discovered against the SGC's less forgiving calculation after the fact.

What your registered BAS or tax agent receives from us

  • SG calculated against ordinary time earnings on every pay run, using the current legislated rate, checked at every financial-year rollover
  • A consistent OTE flag applied to every pay component in Xero Payroll, MYOB or QuickBooks AU — base, allowances, bonuses, leave — with any new or unclassified component surfaced before it runs
  • A quarter-to-date SG reconciliation maintained run by run, not assembled for the first time near the 28-day due date
  • Early-warning flags for any quarter tracking toward a shortfall, timed to leave your registered BAS agent real runway before the due date
  • Clearing-house payment confirmations checked against the quarterly total, so a stalled or partial transfer is caught before it becomes a missed deadline
  • New-starter checklist tracking for Super Choice forms and the stapled-fund lookup, so contributions post to the right fund from the first pay run

Questions worth asking before you start

Who actually does the work — a person or an AI tool?

A named person on our team owns your file and reviews everything that leaves it. Software does a real share of the grinding underneath it — coding, matching, flagging the obvious gaps — but nothing regulated happens without a person’s judgement, and nothing here is signed or filed by an algorithm.

Who can legally lodge this?

Your registered BAS or tax agent. We prepare, reconcile and support the numbers behind it; the submission itself is theirs, every time.

Which software do you work in?

Whatever you already run. Most commonly QuickBooks, Xero, NetSuite, Sage, Zoho Books and a handful of others — we work inside your system rather than moving you onto one of our own.

How does this actually start?

A short, free read-only look at what you already have, and a written note on what we found. A scoping call decides the size of the engagement — nothing here commits you to anything.

What does it cost?

There is no published price for super guarantee processing — it depends on volume, how many entities are involved, and how far behind the books are. We quote after the read-only review, which is free.

How does this fit with the rest of payroll operations?

Super guarantee processing sits inside payroll operations, alongside Payroll processing, Contractor payments, Single Touch Payroll support. Most clients end up buying the category as a whole rather than one leaf at a time, but starting narrow is fine.

Do you calculate how much superannuation guarantee our business owes?

We keep the payroll system's OTE coding and SG rate setting accurate so its own calculation is correct, and we reconcile that running total against the quarterly obligation. Ascertaining the SG liability itself — the legal determination of what's owed — is a BAS service under TASA 2009 s.90-10 and sits with your registered BAS or tax agent, not us.

What counts as ordinary time earnings for super purposes?

Broadly base salary, ordinary hours and most allowances, generally excluding overtime, with genuine grey areas around bonuses and some leave loading under the ATO's SGR 2009/2 ruling. That classification call belongs to your registered BAS agent; we make sure every pay component is tagged consistently in the payroll system and flag anything new or ambiguous for them to classify.

What is the current super guarantee rate and when does it change?

12% of OTE, effective from 1 July 2025 under the legislated phase-in schedule in the Superannuation Guarantee (Administration) Act. We verify the configured rate in your payroll system against the current legislated percentage at every financial-year rollover so a stale setting doesn't run silently for months.

What happens if a super guarantee payment misses the 28-day deadline?

The shortfall converts into a Super Guarantee Charge, which is calculated on a broader base (total salary and wages, not OTE), carries a flat nominal interest component and an admin fee per employee per quarter, and isn't tax-deductible. We reconcile through the quarter, not just near the deadline, so a shortfall has time to be fixed before that conversion happens — whether an SGC statement is ultimately required is a determination for your registered BAS agent.

Can you fix superannuation guarantee for past quarters that were never reconciled?

Yes — that's a catch-up reconciliation. We rebuild the OTE base run by run against what the payroll system actually paid for each affected quarter, surface exactly where the calculated SG diverges from what was contributed, and hand that reconciliation to your registered BAS agent to determine what, if anything, needs to be lodged.

Do you decide which employee payments count toward super?

The classification decision itself — is this bonus or allowance OTE — is your registered BAS agent's or accountant's call under SGR 2009/2. We keep every pay component tagged with a consistent OTE flag in the payroll system and flag any new or unclassified component before it runs.

How do you catch a super guarantee shortfall before the deadline instead of after?

We reconcile the quarter-to-date calculated SG against confirmed fund contributions as pay runs land through the quarter, not only when the 28-day due date is close. A gap between what's calculated and what's actually reached each employee's fund gets flagged with weeks of runway, not days.

What do you check when a new employee starts, for super purposes?

That a Super Choice form was completed and, where relevant, the stapled-fund lookup was done before their first pay run — so contributions post to the fund the employee actually chose or is stapled to, rather than a default that was never deliberately confirmed.

Does superannuation guarantee data feed into Single Touch Payroll reporting?

Yes — STP Phase 2 reports the SG liability figure alongside gross pay and PAYG withholding on each pay event. STP reporting itself is done by your payroll system under your registered BAS agent's oversight, not by us; our part is keeping the underlying SG data we reconcile consistent with what STP reports, so the two never drift apart.

What happens if an allowance is added to payroll and nobody classifies it for super?

Most payroll systems default an unrecognised pay component to a generic treatment rather than pausing for a decision, which can silently under- or over-include it in OTE. We flag any component that isn't already tagged with a known classification the first time it appears, before it runs unclassified across multiple pay cycles, and route the question to your registered BAS agent.

Your CapEasy experts

Connect with us

Talk to the people who handle this work every day — no call centre, no hand-offs.

Ayush Joshi

Ayush Joshi

Co-Founder

Ex-OYO and Tenaciousfly. 7+ years in business development, strategic acquisitions, financing and debt syndication.

Aditya Jain

Aditya Jain

Co-Founder

Ex-Bank of America. 4+ years in investment banking, EU & Indian compliances, ESG compliances, and project management.

Manav Raval

Virtual CFO & Tax Specialist

Section 80-IAC, tax planning and startup compliance. Previously at Toyota Motor Corporation and Jaguar Land Rover.

Ayush Faldu

Virtual CFO & Tax Specialist

Financial strategy, budgeting and cash flow — a CFO’s judgement, monthly.

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